Package index

Consensus methods

Functions for computing consensus trees from a set of input trees.

Adams()

Adams consensus tree

Average()

Average consensus tree

Frequency()

Frequency-difference consensus tree

Greedy()

Greedy (extended majority-rule) consensus tree

Local()

Local consensus tree

Loose()

Loose consensus tree

Majority() MajorityRule() MR()

Majority-rule consensus tree

MajorityPlus()

Majority-rule (+) consensus tree

Quartet()

Consensus tree minimizing quartet distance

RStar()

R* consensus tree

Strict()

Strict consensus tree

BHV tree space

Functions for computing distances and means in the Billera–Holmes–Vogtmann tree space.

BHVDistance() BHVDist() BHV()

Geodesic (BHV) distance between trees

BHVMean() BHVVariance()

Fréchet mean and variance in BHV treespace